 | 11th nPower Football League 2 FA Cup: R3r | League Cup: R1 | JPT Final | Total games: 59 PotS: Sean Clohessy | Most goals: Britt Assombalonga(16) + Gavin Tomlin(16) | Ever present: Sean Clohessy Manager: Paul Sturrock - Phil Brown | Chairman: Ron Martin KEY GD = Goal difference |  |
| # | Team | Pl | HW | HD | HL | HF | HA | AW | AD | AL | AF | AA | Pts | GD |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Gillingham | 46 | 12 | 5 | 6 | 37 | 21 | 11 | 9 | 3 | 29 | 18 | 83 | 27 |
| 2 | Rotherham | 46 | 14 | 1 | 8 | 44 | 29 | 10 | 6 | 7 | 30 | 30 | 79 | 15 |
| 3 | Port Vale | 46 | 10 | 7 | 6 | 50 | 26 | 11 | 8 | 4 | 37 | 26 | 78 | 35 |
| 4 | Burton Albion | 46 | 17 | 3 | 3 | 49 | 23 | 5 | 7 | 11 | 22 | 42 | 76 | 6 |
| 5 | Cheltenham | 46 | 14 | 7 | 2 | 34 | 16 | 6 | 8 | 9 | 24 | 35 | 75 | 7 |
| 6 | Northampton | 46 | 17 | 2 | 4 | 41 | 16 | 4 | 8 | 11 | 23 | 39 | 73 | 9 |
| 7 | Bradford | 46 | 12 | 5 | 6 | 34 | 21 | 6 | 10 | 7 | 29 | 31 | 69 | 11 |
| 8 | Chesterfield | 46 | 9 | 8 | 6 | 39 | 24 | 9 | 5 | 9 | 21 | 21 | 67 | 15 |
| 9 | Oxford Utd | 46 | 9 | 6 | 8 | 29 | 27 | 10 | 2 | 11 | 31 | 34 | 65 | -1 |
| 10 | Exeter | 46 | 7 | 6 | 10 | 29 | 26 | 11 | 4 | 8 | 34 | 36 | 64 | 1 |
| 11 | Southend | 46 | 6 | 8 | 9 | 24 | 25 | 10 | 5 | 8 | 37 | 30 | 61 | 6 |
| 12 | Rochdale | 46 | 8 | 8 | 7 | 33 | 27 | 8 | 5 | 10 | 35 | 43 | 61 | -2 |
| 13 | Fleetwood | 46 | 7 | 9 | 7 | 27 | 32 | 8 | 6 | 9 | 28 | 25 | 60 | -2 |
| 14 | Bristol Rovers | 46 | 11 | 4 | 8 | 32 | 28 | 5 | 8 | 10 | 28 | 41 | 60 | -9 |
| 15 | Wycombe | 46 | 8 | 7 | 8 | 27 | 24 | 9 | 2 | 12 | 23 | 36 | 60 | -10 |
| 16 | Morecambe | 46 | 8 | 9 | 6 | 28 | 27 | 7 | 4 | 12 | 27 | 34 | 58 | -6 |
| 17 | York | 46 | 6 | 8 | 9 | 25 | 31 | 6 | 11 | 6 | 25 | 29 | 55 | -10 |
| 18 | Accrington | 46 | 7 | 7 | 9 | 28 | 34 | 7 | 5 | 11 | 23 | 34 | 54 | -17 |
| 19 | Torquay | 46 | 9 | 6 | 8 | 38 | 40 | 4 | 8 | 11 | 17 | 22 | 53 | -7 |
| 20 | Wimbledon | 46 | 6 | 8 | 9 | 28 | 34 | 8 | 3 | 12 | 26 | 42 | 53 | -22 |
| 21 | Plymouth | 46 | 8 | 7 | 8 | 25 | 24 | 5 | 6 | 12 | 21 | 31 | 52 | -9 |
| 22 | Dag & Red | 46 | 7 | 6 | 10 | 28 | 28 | 6 | 6 | 11 | 27 | 34 | 51 | -7 |
| 23 | Barnet | 46 | 8 | 9 | 6 | 28 | 23 | 5 | 3 | 15 | 19 | 36 | 51 | -12 |
| 24 | Aldershot | 46 | 7 | 4 | 12 | 22 | 30 | 4 | 11 | 8 | 20 | 30 | 48 | -18 |